Add generic microprocessors
Would be really nice if you add simulation of some easy to use microprocessors like for example ATMega8-16 made by Atmel. Possibility to place it and run assembler code inside code. There is already app capable of this (Protheus if i`am right). It would not be easy but in fact it is about creating memory space as on CPU and learn your app basic instruction set like imp means jump to address (index) in program memory etc... Should not be extremely hard. I say this as c++ programmer.
iCircuit supports Arduino elements
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Alan Milke commented
you could open up some short language that at least can help us simulate some output
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Blaise Bernier commented
Would be nice but it means adding an interpreter to the software, and as a C++ programmer, you must know how big of a task it can be.
That being said, making such a feature an in-app purchase would be a good way to compensate for the developement time, since not everyone is using micro controllers and since it's almost an app in itself (adding the code editor, interpreter, debugger, etc.)